| ID | TF | Strength | Number Of Motifs | Number of Sites | Genes |
|---|---|---|---|---|---|
| 9 | pdhR | 14.98 | 4 | 25 | ung-1(0.991) pdhR-1(1.000) glcC-1(1.000) lldP-1(1.000) |
| 29 | ? | 12.19 | 3 | 22 | uvrB-1(1.000) mutH-1(1.000) ygdP-1(1.000) |
| 50 | ntrC | 11.70 | 2 | 14 | yihK-2(1.000) glnL-2(1.000) |
| 30 | soxS oxyR fur | 9.89 | 3 | 18 | sodA-1(1.000) ydiC-1(1.000) b1821-1(0.548) |
| 5 | ? | 9.69 | 5 | 14 | b2392-1(0.693) b2295-1(0.971) fecI-1(0.933) gpmA-1(0.943) ygiD-1(0.996) |
| 2 | xylR ompR | 8.27 | 6 | 23 | xylF-1(0.969) fadL-1(0.990) yciV-1(0.985) ykgM-1(0.999) yneJ-1(0.007) ygaG-1(0.970) |
| 28 | oxyR fur | 8.01 | 3 | 18 | fur-1(1.000) gcvA-1(0.997) ispB-1(0.999) |
| 14 | ? | 7.93 | 4 | 14 | frdA-1(0.929) yhbL-1(1.000) yheS-1(0.982) ydgR-1(0.903) |
| 25 | ? | 7.63 | 3 | 13 | atpI-1(0.977) yfeH-1(0.955) yfeU-1(1.000) |
| 1 | ? | 6.89 | 7 | 33 | fadD-1(0.998) yhhW-1(0.874) b2342-2(0.948) acpD-1(0.994) hflB-1(0.973) ydhB-1(0.851) lipA-1(0.991) |
| 56 | ? | 6.78 | 2 | 10 | flgA-1(0.989) pcnB-1(1.000) |
| 21 | ? | 6.76 | 3 | 12 | gapA-1(0.998) tufA-4(1.000) thrS-1(0.999) |
| 38 | ? | 6.75 | 2 | 11 | pepA-1(1.000) pssR-2(1.000) |
| 12 | ? | 6.72 | 4 | 18 | b0947-1(0.993) yhdG-2(0.998) icdA-1(0.997) yfjB-1(0.973) |
| 6 | ? | 6.69 | 5 | 25 | ssb-1(1.000) rnhA-1(1.000) lpp-2(1.000) map-2(0.999) artP-1(0.038) |
| 7 | ? | 6.53 | 4 | 17 | glyA-1(1.000) tnaA-1(0.289) ytfE-1(1.000) cysP-1(0.156) |
| 52 | ompR | 6.48 | 2 | 8 | b2343-1(1.000) b2532-1(1.000) |
| 16 | ? | 6.39 | 3 | 15 | rpsL-1(1.000) tig-1(0.920) rplM-1(0.966) |
| 31 | ? | 6.33 | 3 | 12 | lig-1(0.989) yfiM-1(0.996) cysW-1(1.000) |
| 32 | nagC | 6.11 | 2 | 11 | nagE-1(0.996) ybfM-1(1.000) |
| 10 | ? | 5.73 | 4 | 13 | yhaK-1(0.965) yheS-2(0.892) yeaA-1(0.595) frr-1(0.998) |
| 3 | ? | 5.72 | 5 | 21 | deaD-1(0.980) lpp-1(0.997) eno-1(0.873) yceF-2(0.999) ribH-1(0.842) |
| 19 | ? | 5.62 | 3 | 11 | yigL-1(0.956) yihI-1(0.969) yqiE-1(0.379) |
| 62 | fnr | 5.61 | 2 | 11 | nirB-1(0.991) b1057-1(1.000) |
| 43 | ? | 5.61 | 2 | 7 | pdhR-2(1.000) ygiG-2(1.000) |
| 34 | ? | 5.60 | 2 | 8 | yohL-1(0.999) yifE-1(0.999) |
| 8 | ? | 5.57 | 4 | 17 | rpsA-1(0.957) yhhF-1(0.998) yhhP-1(0.966) lon-1(0.988) |
| 17 | ? | 5.53 | 3 | 11 | pitA-2(0.526) rpsF-2(1.000) lolA-2(0.995) |
| 42 | ? | 5.29 | 2 | 11 | hfq-1(1.000) yfgB-1(1.000) |
| 27 | ? | 5.28 | 3 | 14 | yhcS-1(0.998) secE-1(0.996) ilvG_1-2(0.902) |
| 15 | ? | 5.11 | 4 | 14 | yhdW-1(0.997) b2379-1(0.977) ycaD-1(0.990) b2496-1(0.992) |
| 18 | IRU | 5.01 | 3 | 15 | kduI-1(0.885) rplJ-3(0.989) alaS-1(0.567) |
| 4 | fruR | 4.99 | 5 | 18 | pfkA-1(0.994) rpoZ-1(0.600) yegQ-1(0.999) pepT-1(0.955) b0502-3(0.962) |
| 55 | ? | 4.96 | 2 | 10 | rpsM-3(1.000) zipA-1(0.991) |
| 54 | gcvA | 4.91 | 2 | 11 | gcvT-1(1.000) ygbI-1(0.165) |
| 37 | ? | 4.89 | 2 | 12 | yidC-1(0.999) tufA-2(0.999) |
| 13 | ? | 4.75 | 4 | 14 | b2595-1(0.997) csrA-1(0.998) proV-1(0.119) tgt-1(0.687) |
| 59 | ilvY | 4.61 | 2 | 16 | ilvY-1(0.999) ygjN-1(0.948) |
| 23 | ? | 4.61 | 3 | 17 | clpB-1(0.565) trxA-2(0.994) tktA-1(1.000) |
| 41 | ? | 4.51 | 2 | 8 | fabF-1(1.000) mopB-1(1.000) |
| 26 | ? | 4.33 | 3 | 10 | argG-1(0.993) xseA-2(0.999) b0502-1(0.211) |
| 46 | fadR | 4.28 | 2 | 8 | pepQ-2(0.997) b2342-1(0.998) |
| 40 | ? | 4.25 | 2 | 10 | yhhF-2(0.996) rplJ-1(0.996) |
| 45 | ? | 4.02 | 2 | 9 | hupA-1(0.996) ribB-4(0.997) |
| 47 | ? | 3.96 | 2 | 7 | ribH-2(0.997) ykfC-4(0.970) |
| 20 | ? | 3.84 | 3 | 11 | metJ-1(0.227) yciD-1(0.033) yraL-1(0.059) |
| 24 | REP | 3.83 | 3 | 13 | mhpT-3(0.199) nadA-1(0.913) yjjB-1(0.999) |
| 22 | ? | 3.80 | 3 | 16 | b2595-3(0.921) hemN-3(0.825) map-1(0.999) |
| 11 | ? | 3.78 | 4 | 14 | yhdY-1(0.760) yiiP-1(0.721) yjjV-1(0.843) rpmI-1(0.993) |
| 51 | fur | 3.73 | 2 | 7 | tonB-1(0.979) rmf-1(0.992) |
| 35 | ? | 3.67 | 2 | 7 | lpxC-1(0.346) metK-1(0.999) |
| 53 | ? | 3.37 | 2 | 10 | ybeB-1(0.984) cysW-2(0.989) |
| 60 | ? | 3.26 | 2 | 8 | ybaR-1(0.989) ykfC-1(0.563) |
| 49 | ? | 3.21 | 2 | 10 | yhdG-1(0.979) mscL-1(0.844) |
| 48 | ? | 3.07 | 2 | 9 | csrA-2(1.000) yiaU-1(0.020) |
| 61 | ? | 2.70 | 2 | 8 | ykgE-1(0.656) rpmB-3(0.989) |
| 57 | ? | 2.67 | 2 | 7 | pitA-3(0.928) lysP-1(0.986) |
| 44 | ? | 2.62 | 2 | 6 | nadC-1(0.956) dnaQ-1(0.921) |
| 63 | ? | 2.23 | 2 | 11 | pta-1(0.883) uvrC-1(0.884) |
| 36 | ? | 2.20 | 2 | 8 | pitA-1(0.713) thrA-1(0.099) |
| 58 | ? | 2.12 | 2 | 9 | tufA-3(0.999) pssR-1(0.925) |
| 39 | ? | 1.35 | 2 | 6 | hemN-1(0.714) ygiG-1(0.397) |
| 33 | ? | 1.31 | 2 | 9 | b0967-1(0.754) yabB-1(0.151) |
| 64 | ? | 0.00 | 1 | 9 | rpoB-1(0.072) |
| 65 | ? | 0.00 | 1 | 7 | rplN-1(0.647) |
| 66 | ? | 0.00 | 1 | 7 | rpsM-2(0.003) |
| 67 | IRU | 0.00 | 1 | 7 | rplJ-2(0.961) |
| 68 | ? | 0.00 | 1 | 5 | yidC-2(0.999) |
| 69 | ? | 0.00 | 1 | 5 | rpsL-2(0.001) |
| 70 | ? | 0.00 | 1 | 5 | purA-1(0.942) |
| 71 | ? | 0.00 | 1 | 12 | b2531-2(0.917) |
| 72 | ? | 0.00 | 1 | 3 | fabA-1(0.538) |
| 73 | ? | 0.00 | 1 | 4 | trxA-1(0.059) |
| 74 | ? | 0.00 | 1 | 6 | yeaA-2(0.728) |
| 75 | ? | 0.00 | 1 | 7 | yhbY-1(0.001) |
| 76 | ? | 0.00 | 1 | 6 | hisG-1(0.930) |
| 77 | ? | 0.00 | 1 | 5 | thiC-1(0.099) |
| 78 | ? | 0.00 | 1 | 6 | rpsP-1(0.003) |
| 79 | ? | 0.00 | 1 | 5 | tsf-1(0.978) |
| 80 | ? | 0.00 | 1 | 3 | folC-1(0.861) |
| 81 | ? | 0.00 | 1 | 6 | mutY-1(0.651) |
| 82 | ? | 0.00 | 1 | 6 | ribB-2(0.008) |
| 83 | ? | 0.00 | 1 | 6 | prsA-2(0.983) |
| 84 | TERM | 0.00 | 1 | 3 | arsR-1(0.001) |
| 85 | ? | 0.00 | 1 | 6 | moaA-1(0.652) |
| 86 | ? | 0.00 | 1 | 3 | ychF-1(0.004) |
| 87 | ? | 0.00 | 1 | 6 | secG-1(0.245) |
| 88 | ? | 0.00 | 1 | 4 | rpmB-1(0.744) |
| 89 | ? | 0.00 | 1 | 8 | rpsT-1(0.993) |
| 90 | ? | 0.00 | 1 | 4 | trmA-1(0.404) |
| 91 | ? | 0.00 | 1 | 10 | ribB-3(0.232) |
| 92 | ? | 0.00 | 1 | 4 | b3022-1(0.410) |
| 93 | ? | 0.00 | 1 | 5 | ilvG_1-1(0.997) |
| 94 | ? | 0.00 | 1 | 4 | gyrA-1(0.988) |
| 95 | ? | 0.00 | 1 | 7 | nuoN-1(0.997) |
| 96 | ? | 0.00 | 1 | 4 | rpsM-4(0.015) |
Note: REP and IRU are both types of known intergenic repeats in E. coli. TERM are predicted rho-independent terminators.
See:
Repeated Sequences, S. Bachellier, E. Gilson, M. Hofnung, and C.W. Hill, in Escherichia coli and Salmonella: Cellular and Molecular Biology, F.C. Neidhardt (ed.), 1996, ASM Press, Washington DC, pp. 2012-2040.
Novel intergenic repeats of Escherichia coli K-12, K.E. Rudd, Res Microbiol, 1999, 150:653-664.
