Sendemail to jliu@stat.harvard.edu or wwong@hsph.harvard.edu
Office (Jun Liu):
711 Science
Center, 1 Oxford Street, Cambridge, MA 02138
Office Phone: (617) 495-1600 Office Hours: by appointment
Class meets every Friday 1:00pm
Classroom changed to Science Center 110
· Lectures
·
Introduction and Biological Databases (9/22/00)
·
Dynamic programming
(DP) and BLOSUM. (9/29)
·
Variations of DP
and generative probability models (10/6)
·
Sequence
segmentation, Markov and HMM models (10/13)
·
Estimation in HMM
--- EM, Gibbs, Viterbi, etc. (10/20)
·
Stochastic
context-free grammar for RNA; MCMC computing (10/27) Note: you need to download it
to your machine; Reader embedded in IE does not work for some parts.
·
Gene regulation
and motif finding; phylogenetic trees (11/3)
·
Blast Theory
(11/17)
·
EST
and Uni-gene; Detection
of SNPs (12/1)
·
Demonstrations
of motif sampler and HMMs (12/8)
·
Student Project Presentations (12/15; 1/5; 1/12)
Other course materials have
moved to the university website http://www.courses.fas.harvard.edu/~stat315
Access to the lecture notes will
require password
Contact the instructors for
password information