Supplemental material

for

 

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites

 

Zhaohui S. Qin, Lee Ann McCue, William Thompson, Linda Mayerhofer,

Charles E. Lawrence, and Jun S. Liu

 

        Putative binding sites of E. coli and other gamma proteobacteria species, McCue, et al. 2001 and McCue, et al. 2002. Access the database here (data from Wadsworth Center, New York)

        Complete result on even palindromic motifs

        Complete result on odd palindromic motifs

        Supporting Text (PDF document)

        Table A2 Logo plots of clusters of even palindromic motifs from the E. coli phylogenetic footprints (Bayes ratio: 6-8)

        Table A3 Logo plots of clusters of odd palindromic motifs from the E. coli phylogenetic footprints (Bayes ratio: 6-8)

        Register for the BMC program (to receive update notice)here

        Download the BMC program (linux version) here (SUN Solaris version) here.

        This research was partly supported by the NSF Grants DMS-0094617 and DMS-0104129 to JSL, NIH Grant R01HG01257 to CEL, and DOE Grant DEFG0201ER63204 to CEL and LAM.