1.      Bayesian Clustering with Variable and Transformation Selection

Bayesian Statistics 7, to appear. Joint with J.L. Zhang et al.

2.      Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites (Fig1, Fig2).

Nature Biotechnology 21, 435-39. Joint with SZ Qin et al. Read the Supplemental Materials.

3.      Discovery of conserved sequence patterns using a stochasticdictionary model.

J. Amer. Statist. Assoc., 98, 55-66. Joint with Mayetri Gupta.

4.      Canonical Ras, Rab, Rho and Ran GTPase structural features and Rans C-terminal and basic patch mechanisms.

Genome Research, 13, 673-92. Joint with AF Neuwald et al.

5.      Integrating sequence motif discovery and microarray Analysis.

Proc. Nat'l Acad. Sci. USA, 100, 3339-44. Joint with E Conlon et al. Download Motif Regressor ! Erin Conlon also maintains a website for the software at here.

6.      The sigma-E regulon and the identification of additional sporulation genes in Bacillus subtilis.

J. Mol. Biol. 327, 945-72. Joint with Eichenberger (Losick's lab) et al.

7.      Bayesian Methods in Biological Sequence Analysis.

In Handbook of Statistical Genetics, 2nd Ed.  D.J. Balding, M. Bishop and C. Cannings (eds). Wiley, Chichester. Joint with T. Logvinenko.

8.      Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms.

Genome Research. 13, 2112-17. Joint with X. Lu and T. Niu. Download BLADE V.2 here!