2001

1. "Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes "

      Nucleic Acids Research, 29, 774-782. With McCue et al. (Chip Lawrence lab)

2. "Bayesian Protein Structure Prediction "

       Case Studies in Bayesian Statistics 5. With S.C. Schmidler and D.L. Brutlag.

3. "BIOPROSPECTOR: Discovering Conserved DNA motifs in upstream regulatory regions … "

       Proceedings of the Pacific Symposium on Biocomputing (PSB).

Joint with XS Liu and DL Brutlag. Link to the BioProspector program.

4.  Monte Carlo Strategies in Scientific Computing.  (Research Monograph)

      Springer-Verlag, New York.

5. "A Theory for Dynamic Weighting In Monte Carlo"

      J. Amer. Statist. Assoc.,  96, 561-573. With F.M. Liang and W.H. Wong.

6. "Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping "

Genome Research, 11:1716-24.  Joint with C Sabatti, J Teng, BJB Keats, N Risch.   

Download the BLADE algorithm here (a Linux executable).

7. "A theoretical framework for sequential importance sampling and resampling "

       Sequential Monte Carlo in Practice, Springer-Verlag. With Rong Chen and Tanya Logvinenko.

8.Exploring hybrid Monte Carlo in Bayesian computation

       ISBA 2000, Proceedings. Joint with L Chen and S. Qin

9.Multi-Point Metropolis method with application to hybrid Monte Carlo

       J. Comp. Phys., 172:827-40. Joint with S. Qin